ZNF658:Zinc finger protein 658

Gene Name
Zinc finger protein 658
Protein ID
Q5TYW1
Chromosome ID
9
HPP Status
2
Protein Name
Zinc finger protein 658
Synonyms

zinc finger protein 658


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF658 ]
Chromosomal Position
9q21.11 | Start:66856426 End:66856426
Sequence
Q5TYW1.fasta
Description

UniProtKB Summary for ZNF658
Function: May be involved in transcriptional regulation

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF658 ]
External IDs
Hgnc ID: 25226 EntrezGene ID: 26149 Ensembl ID: ENSG00000196409
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF658 ]
Reference Source
http://www.nextprot.org

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalian with experimental evidenceZN658_HUMANRBAK_MOUSE105954751.0151.65249551510471597006E-152534
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
ZN658_HUMANIPR001909GO:0003676DomainKrueppel-associated boxMolecular Functionnucleic acid binding
ZN658_HUMANIPR001909GO:0005622DomainKrueppel-associated boxCellular Componentintracellular
ZN658_HUMANIPR007087GO:0046872DomainZinc finger, C2H2Molecular Functionmetal ion binding
ZN658_HUMANIPR013087GO:0003676DomainZinc finger C2H2-type/integrase DNA-binding domainMolecular Functionnucleic acid binding
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q5TYW1_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/Q5TYW1_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


Showing 1-1 of 1 item.

PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
MNLPVASQLIISER0.0305666612743698,Mascot:expectation;23.61,Mascot:score;PXD000764_34943_300_Q5TYW1_MNLPVASQLIISERPXD000764;60.mgf;index=8887
Evidence File
/mnt/mpp/ms_data/Q5TYW1_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q5TYW1_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB