CCDC171:Coiled-coil domain-containing protein 171

Gene Name
Coiled-coil domain-containing protein 171
Protein ID
Q6TFL3
Chromosome ID
9
HPP Status
1
Protein Name
Coiled-coil domain-containing protein 171
Synonyms

coiled-coil domain-containing protein 171

"myosin tail domain containing protein"

bA778P13.1

C9orf93

chromosome 9 open reading frame 93

myosin tail domain containing protein

bA536D16.1

coiled-coil domain containing 171


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC171 ]
Chromosomal Position
9p22.3 | Start:15552897 End:15552897
Sequence
Q6TFL3.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC171 ]
External IDs
Hgnc ID: 29828 EntrezGene ID: 203238 Ensembl ID: ENSG00000164989
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC171 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianCC171_HUMANCC171_MOUSE1326132886.9100.151684113261132402195
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-20 of 106 items.

gpmDB

Peptide SequenceEvidence LevelLog ENumber Of ObservationSpectraAccession IDProteotypicityAnnotation
ELQQTQEDTFTKVAEQIKyellow-13.641ENSP00000297641Proteotypic
ELQQTQEDTFTKVAEQIKyellow-13.641ENSP00000297641Proteotypic
ELQQTQEDTFTKVAEQIKgreen-13.641ENSP00000370077Proteotypic
ELQQTQEDTFTKVAEQIKgreen-13.641ENSP00000370077Proteotypic
ELQQTQEDTFTKVAEQIKgreen-13.041ENSP00000370077Proteotypic
ELQQTQEDTFTKVAEQIKgreen-13.041ENSP00000370077Proteotypic
ELQQTQEDTFTKVAEQIKgreen-13.041ENSP00000370077Proteotypic
ELQQTQEDTFTKVAEQIKgreen-13.041ENSP00000370077Proteotypic
IQEKLCAQNSELQAKgreen-10.3121ENSP00000370077Proteotypic
IQEKLCAQNSELQAKgreen-10.3121ENSP00000370077Proteotypic
IQEKLCAQNSELQAKgreen-10.3121ENSP00000438838Proteotypic
IQEKLCAQNSELQAKgreen-10.3121ENSP00000438838Proteotypic
IQEKLCAQNSELQAKgreen-10.3121ENSP00000438838Proteotypic
IQEKLCAQNSELQAKgreen-10.3121ENSP00000438838Proteotypic
IQEKLCAQNSELQAKgreen-10.3121ENSP00000370077Proteotypic
IQEKLCAQNSELQAKgreen-10.3121ENSP00000370077Proteotypic
SITYVEKDSLVQRgreen-9.3211ENSP00000370077Proteotypic
SITYVEKDSLVQRgreen-9.3211ENSP00000409055Proteotypic
SITYVEKDSLVQRgreen-9.3211ENSP00000370077Proteotypic
SITYVEKDSLVQRgreen-9.3211ENSP00000409055Proteotypic
Evidence File
/mnt/mpp/ms_data/Q6TFL3_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


Showing 1-3 of 3 items.

PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
TFKGLIR24.25,Mascot:score;0.00845634159648999,Mascot:expectation;PXD001311_39728_764_Q6TFL3_TFKGLIRPXD001311;hmf_con_cyt2_1.mgf;index=31553
EKAQAAQSESELQK0.0245510010194975,Mascot:expectation;40.38,Mascot:score;PXD003271_59947_941_Q6TFL3_EKAQAAQSESELQKPXD003271;MR1546A.mgf;index=4699
EKAQAAQSESELQK0.0257103213185267,Mascot:expectation;36.95,Mascot:score;PXD003271_59865_2067_Q6TFL3_EKAQAAQSESELQKPXD003271;MR1272C.mgf;index=3319
Evidence File
/mnt/mpp/ms_data/Q6TFL3_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-5 of 5 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
EKAQAAQSESELQKMaxquant172.130260076287219
EKAQAAQSESELQKMaxquant155.860260076325219
EYDLLMKMaxquant155.5107901109802297
EALISTLKMaxquant119.2706897751865
LKIASLDVKMaxquant115.7011498159642458
Evidence File
/mnt/mpp/ms_data/Q6TFL3_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB