ANKRD18A:Ankyrin repeat domain-containing protein 18A

Gene Name
Ankyrin repeat domain-containing protein 18A
Protein ID
Q8IVF6
Chromosome ID
9
HPP Status
2
Protein Name
Ankyrin repeat domain-containing protein 18A
Synonyms

KIAA2015

ankyrin repeat domain-containing protein 18A

ankyrin repeat domain 18A


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ANKRD18A ]
Chromosomal Position
9p13.1 | Start:38543253 End:38543253
Sequence
Q8IVF6.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ANKRD18A ]
External IDs
Hgnc ID: 23643 EntrezGene ID: 253650 Ensembl ID: ENSG00000180071
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ANKRD18A ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
23131552These results suggest that ANKRD18A hypermethylation and consequent mRNA alterations might be a vital molecular mechanism in lung cancer.2013-04-06
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
AN18A_HUMANIPR002110GO:0005515RepeatAnkyrin repeatMolecular Functionprotein binding
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q8IVF6_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/Q8IVF6_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


Showing 1-3 of 3 items.

PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
MKTAYEEVTTELEEFK0.0349174005059195,Mascot:expectation;15.53,Mascot:score;PXD000039_27340_37782_Q8IVF6_MKTAYEEVTTELEEFKPXD000039;PRIDE_Exp_Complete_Ac_27340.xml;spectrum=37782
MKTAYEEVTTELEEFK0.0349174005059195,Mascot:expectation;15.53,Mascot:score;PXD000039_27340_37782_Q8IVF6_MKTAYEEVTTELEEFKPXD000039;PRIDE_Exp_Complete_Ac_27340.xml;spectrum=37782
MKTAYEEVTTELEEFK0.0349174005059195,Mascot:expectation;15.53,Mascot:score;PXD000039_27340_37782_Q8IVF6_MKTAYEEVTTELEEFKPXD000039;PRIDE_Exp_Complete_Ac_27340.xml;spectrum=37782
Evidence File
/mnt/mpp/ms_data/Q8IVF6_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-2 of 2 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
KMLEEEVLNLKMaxquant128.8106896065370
KMLEEEVLNLKMaxquant120.0906867374758
Evidence File
/mnt/mpp/ms_data/Q8IVF6_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB