ZNF780B:Zinc finger protein 780B

Gene Name
Zinc finger protein 780B
Protein ID
Q9Y6R6
Chromosome ID
19
HPP Status
2
Protein Name
Zinc finger protein 780B
Synonyms

zinc finger protein 779

zinc finger protein 780B

ZNF779

zinc finger protein 779

Zinc finger protein 779


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF780B ]
Chromosomal Position
19q13.2 | Start:40028260 End:40028260
Sequence
Q9Y6R6.fasta
Description

UniProtKB Summary for ZNF780B
Function: May be involved in transcriptional regulation (By similarity)

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF780B ]
External IDs
Hgnc ID: 33109 EntrezGene ID: 163131 Ensembl ID: ENSG00000128000
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF780B ]
Reference Source
http://www.nextprot.org

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalian with experimental evidenceZ780B_HUMANZSCA2_MOUSE83340951.5949.119803457532066149E-123437
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q9Y6R6_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/Q9Y6R6_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


Showing 1-1 of 1 item.

PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
AFNRGSNLIQHQK42.34,Mascot:score;0.00608849430765321,Mascot:expectation;95.52,Mascot:PTM site assignment confidence;PXD003271_59866_389_Q9Y6R6_AFNRGSNLIQHQKPXD003271;MR1247B.mgf;index=4843
Evidence File
/mnt/mpp/ms_data/Q9Y6R6_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q9Y6R6_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB