ZNF253:Zinc finger protein 253

Gene Name
Zinc finger protein 253
Protein ID
O75346
Chromosome ID
19
HPP Status
2
Protein Name
Zinc finger protein 253
Synonyms

Zinc finger protein 411

Bone marrow zinc finger 1

DNA-binding protein

zinc finger protein 411

BMZF1

zinc finger protein 253

BMZF-1

bone marrow zinc finger 1

ZNF411


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF253 ]
Chromosomal Position
19p13.11 | Start:19865886 End:19865886
Sequence
O75346.fasta
Description

UniProtKB Summary for ZNF253
Function: May function as a transcription factor. Seem to have a transcriptional repression activity

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF253 ]
External IDs
Hgnc ID: 13497 EntrezGene ID: 56242 Ensembl ID: ENSG00000256771
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF253 ]
Reference Source
http://www.nextprot.org

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalian with experimental evidenceZN253_HUMANZ354C_RAT49931351.1262.7315301394512415532E-86315
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-10 of 10 items.

gpmDB

Peptide SequenceEvidence LevelLog ENumber Of ObservationSpectraAccession IDProteotypicityAnnotation
KTFTWPSILSKgreen-7.9301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-7.9301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-7.2301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-7.2301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-7.0301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-7.0301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-6.8301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-6.8301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-6.6301ENSP00000347868Proteotypic
KTFTWPSILSKgreen-6.6301ENSP00000347868Proteotypic
Evidence File
/mnt/mpp/ms_data/O75346_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/O75346_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/O75346_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/O75346_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB