ARID3C:AT-rich interactive domain-containing protein 3C

Gene Name
AT-rich interactive domain-containing protein 3C
Protein ID
A6NKF2
Chromosome ID
9
HPP Status
3
Protein Name
AT-rich interactive domain-containing protein 3C
Synonyms

ARID domain-containing protein 3C

Brightlike

AT-rich interactive domain-containing protein 3C

AT rich interactive domain 3C (BRIGHT-like)

AT rich interactive domain 3C (BRIGHT- like)


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ARID3C ]
Chromosomal Position
9p13.3 | Start:34621379 End:34621379
Sequence
A6NKF2.fasta
Description

Entrez Gene Summary for ARID3C
This gene is a member of the ARID (AT-rich interaction domain) family of proteins. The ARID domain is a helix-turn-helix motif-based DNA-binding domain. ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation and possibly in chromatin structure modification. (provided by RefSeq, Jul 2008)

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ARID3C ]
External IDs
Hgnc ID: 21209 EntrezGene ID: 138715 Ensembl ID: ENSG00000205143
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ARID3C ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
21955986this report introduces Brightlike as an additional functional member of the family of ARID proteins, which should be considered in regulatory circuits, previously ascribed to be mediated by Bright.[ARID3C]2012-09-14
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalian with experimental evidenceARI3C_HUMANARI3A_MOUSE41233650.681.559512973832275405E-75277
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
ARI3C_HUMANIPR001606GO:0003677DomainARID/BRIGHT DNA-binding domainMolecular FunctionDNA binding
ARI3C_HUMANIPR001606GO:0005622DomainARID/BRIGHT DNA-binding domainCellular Componentintracellular
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-2 of 2 items.

gpmDB

Peptide SequenceEvidence LevelLog ENumber Of ObservationSpectraAccession IDProteotypicityAnnotation
EESGIPNPCLALPVGLALGPTRgreen-9.751ENSP00000368189Proteotypic
EESGIPNPCLALPVGLALGPTRgreen-9.751ENSP00000368189Proteotypic
Evidence File
/mnt/mpp/ms_data/A6NKF2_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/A6NKF2_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/A6NKF2_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-2 of 2 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
GGLVEVINRKVWRMaxquant161.99011486546102458
GGLVEVINRKVWRMaxquant150.06011486546442458
Evidence File
/mnt/mpp/ms_data/A6NKF2_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB