LCN9:Epididymal-specific lipocalin-9

Gene Name
Epididymal-specific lipocalin-9
Protein ID
Q8WX39
Chromosome ID
9
HPP Status
2
Protein Name
Epididymal-specific lipocalin-9
Synonyms

epididymis luminal protein 129

MUP-like lipocalin

epididymal-specific lipocalin-9

"epididymal-specific lipocalin-9"

HEL129

lipocalin 9

"MUP-like lipocalin"

9230102I19Rik


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=LCN9 ]
Chromosomal Position
9q34.3 | Start:135663322 End:135663322
Sequence
Q8WX39.fasta
Description

Entrez Gene Summary for LCN9
Members of the lipocalin family, such as LCN9, have a common structure consisting of an 8-stranded antiparallel beta-barrel that forms a cup-shaped ligand-binding pocket or calyx. Lipocalins generally bind small hydrophobic ligands and transport them to specific cells (Suzuki et al., 2004 (PubMed 15363845)).(supplied by OMIM, Aug 2009)

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=LCN9 ]
External IDs
Hgnc ID: 17442 EntrezGene ID: 392399 Ensembl ID: ENSG00000148386
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=LCN9 ]
Reference Source
http://www.nextprot.org

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
LCN9_HUMANIPR002971GO:0005215FamilyMajor urinary proteinMolecular Functiontransporter activity
LCN9_HUMANIPR002971GO:0005550FamilyMajor urinary proteinMolecular Functionpheromone binding
LCN9_HUMANIPR002971GO:0006810FamilyMajor urinary proteinBiological Processtransport
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q8WX39_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/Q8WX39_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q8WX39_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB