C9orf50:Uncharacterized protein C9orf50

Gene Name
Uncharacterized protein C9orf50
Protein ID
Q5SZB4
Chromosome ID
9
HPP Status
2
Protein Name
Uncharacterized protein C9orf50
Synonyms

uncharacterized protein C9orf50

chromosome 9 open reading frame 50


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C9ORF50 ]
Chromosomal Position
9q34.11 | Start:129612225 End:129612225
Sequence
Q5SZB4.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C9ORF50 ]
External IDs
Hgnc ID: 23677 EntrezGene ID: 375759 Ensembl ID: ENSG00000179058
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C9ORF50 ]
Reference Source
http://www.nextprot.org

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
All Reviewed HumanCI050_HUMANCI050_HUMAN43143110010000143114310706
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q5SZB4_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/Q5SZB4_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-1 of 1 item.

Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q5SZB4_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB