CPED1:Cadherin-like and PC-esterase domain-containing protein 1

Gene Name
Cadherin-like and PC-esterase domain-containing protein 1
Protein ID
A4D0V7
Chromosome ID
7
HPP Status
2
Protein Name
Cadherin-like and PC-esterase domain-containing protein 1
Synonyms

cadherin-like and PC-esterase domain-containing protein 1

cadherin-like and PC-esterase domain containing 1

chromosome 7 open reading frame 58

C7orf58


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CPED1 ]
Chromosomal Position
7q31.31 | Start:120988677 End:120988677
Sequence
A4D0V7.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CPED1 ]
External IDs
Hgnc ID: 26159 EntrezGene ID: 79974 Ensembl ID: ENSG00000106034
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CPED1 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
20031566Observational study of gene-disease association. (HuGE Navigator)2010-04-07
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
24945404Variants at the CPED1 locus were strongly associated with bone mineral density at the skull and upper limb sites, but not with lower limb-bone mineral density.2015-06-27
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation


Subcellular


Homologues, Orthologues, Paralogues and Family


Orthologues

Family


Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
All Reviewed HumanCPED1_HUMANCPED1_HUMAN1026100810098.250019102619102602067
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/A4D0V7_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/A4D0V7_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/A4D0V7_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-2 of 2 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
ENLIILDTAKMaxquant149.2606057080415
LNETLQEWQKMaxquant140.450249375698127
Evidence File
/mnt/mpp/ms_data/A4D0V7_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB