ZNF804B:Zinc finger protein 804B

Gene Name
Zinc finger protein 804B
Protein ID
A4D1E1
Chromosome ID
7
HPP Status
2
Protein Name
Zinc finger protein 804B
Synonyms

zinc finger 804B

zinc finger protein 804B

zinc finger 804B


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF804B ]
Chromosomal Position
7q21.13 | Start:88759368 End:88759368
Sequence
A4D1E1.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF804B ]
External IDs
Hgnc ID: 21958 EntrezGene ID: 219578 Ensembl ID: ENSG00000182348
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF804B ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
20547088Observational study of genotype prevalence. (HuGE Navigator)2010-06-30
21079607Observational study and genome-wide association study of gene-disease association. (HuGE Navigator)2010-12-05
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions


Molecular function


Localisation



Homologues, Orthologues, Paralogues and Family


Orthologues

Paralogues

Family


Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianZ804B_HUMANZ804A_MOUSE134925554.5118.9888124512372E-65249
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
Z804B_HUMANIPR007087GO:0046872DomainZinc finger, C2H2Molecular Functionmetal ion binding
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications


Post Translational Modifications

Ptm NamePtm SiteEvidence
No results found.

Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/A4D1E1_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/A4D1E1_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/A4D1E1_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-2 of 2 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
NNSSENKMaxquant139.3107908136782297
NNSSENKMaxquant122.130248212141274
Evidence File
/mnt/mpp/ms_data/A4D1E1_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB

Structural Studies