TMEM213:Transmembrane protein 213

Gene Name
Transmembrane protein 213
Protein ID
A2RRL7
Chromosome ID
7
HPP Status
3
Protein Name
Transmembrane protein 213
Synonyms

transmembrane protein 213


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TMEM213 ]
Chromosomal Position
7q34 | Start:138797952 End:138797952
Sequence
A2RRL7.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TMEM213 ]
External IDs
Hgnc ID: 27220 EntrezGene ID: 155006 Ensembl ID: ENSG00000214128
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TMEM213 ]
Reference Source
http://www.nextprot.org

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions


Generic function

Function Description

This gene is overexpressed in platelet.

Reference
http://www.genecards.org/cgi-bin/carddisp.pl?gene=TMEM213#protein_expression
Contributed By
Chromosome 7 Research Group Australia

Localisation


Subcellular

Localization Description

Membrane; Single-pass type I membrane protein.

Reference
http://www.uniprot.org/uniprot/A2RRL7#subcellular_location
Contributed By
Chromosome 7 Research Group Australia

Tissue

Localization Description

Over expressed in kidney and salivary glands

Over expressed in platelets


Reference
http://www.proteinatlas.org/ENSG00000214128-TMEM213/tissue
http://www.genecards.org/cgi-bin/carddisp.pl?gene=TMEM213&keywords=tmem213#expression
Contributed By
Chromosome 7 Research Group Australia

Homologues, Orthologues, Paralogues and Family


Orthologues

Orthologs

mouse (Mus musculus), chicken (Gallus gallus), lizard (Anolis carolinensis), cow (Bos Taurus), dog (Canis familiaris), chimpanzee (Pan troglodytes), rat (Rattus norvegicus), platypus (Ornithorhynchus anatinus)

Reference
http://www.genecards.org/cgi-bin/carddisp.pl?gene=TMEM213#protein_expression
Contributed By
Chromosome 7 Research Group Australia

Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianTM213_HUMANTM213_MOUSE1077185.9266.3610037107461169E-33135
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions


Database Name

BioGRID

Database Link

http://thebiogrid.org/166968/publication/the-bioplex-network-of-human-protein-interactions-additional-unpublished-ap-ms-results.html ">http://thebiogrid.org /

Interaction

7 interactions

Interacting Partner

METAP2, DCUN1D5, ALG11, EFNB1, TCF4, GLMN, MAT2A

Reference
http://thebiogrid.org/127567
Contributed By
Chromosome 7 Research Group Australia

Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/A2RRL7_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/A2RRL7_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/A2RRL7_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB