GALNTL6:Polypeptide N-acetylgalactosaminyltransferase-like 6

Gene Name
Polypeptide N-acetylgalactosaminyltransferase-like 6
Protein ID
Q49A17
Chromosome ID
4
HPP Status
2
Protein Name
Polypeptide N-acetylgalactosaminyltransferase-like 6
Synonyms

polypeptide GalNAc transferase 17

Polypeptide GalNAc transferase 17

GalNAc-T6L

polypeptide GalNAc transferase-like 6

GALNT17

polypeptide N-acetylgalactosaminyltransferase-like 6

protein-UDP acetylgalactosaminyltransferase 17

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 20

GalNAc transferase 17

putative polypeptide N-acetylgalactosaminyltransferase 17

pp-GaNTase 17

Putative polypeptide N-acetylgalactosaminyltransferase 17

UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 17

galNAc-T17

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6

Protein-UDP acetylgalactosaminyltransferase 17

"polypeptide GalNAc transferase-like 6"

GALNACT20

GalNAc-T17

GaNTase 17

EC 2.4.1.41


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=GALNTL6 ]
Chromosomal Position
4q34.1 | Start:171812254 End:171812254
Sequence
Q49A17.fasta
Description

UniProtKB Summary for GALNTL6
Function: Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor (By similarity)

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=GALNTL6 ]
External IDs
Hgnc ID: 33844 EntrezGene ID: 442117 Ensembl ID: ENSG00000174473
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=GALNTL6 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
18519826Clinical trial and genome-wide association study of gene-disease association, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator)2009-12-02
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
20977886a novel member of the human ppGalNAc-T family, ppGalNAc-T20, which has high homology with human ppGalNAc-T10 was identified.2011-01-15
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


KEGG Pathways

Pathway IDDatabase NamePathway Name
hsa00512KEGG PATHWAYMucin type O-Glycan biosynthesis
hsa01100KEGG PATHWAYMetabolic pathways
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q49A17_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/Q49A17_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q49A17_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB