CCDC162P:Coiled-coil domain-containing protein 162

Gene Name
Coiled-coil domain-containing protein 162
Protein ID
A2VCL2
Chromosome ID
6
HPP Status
2
Protein Name
Coiled-coil domain-containing protein 162
Synonyms

bA425D10.7

C6orf184

chromosome 6 open reading frame 184

bA425D10.3

Coiled-coil domain-containing protein 162 pseudogene

chromosome 6 open reading frame 185

coiled-coil domain containing 162, pseudogene

CCDC162

C6orf185


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC162P ]
Chromosomal Position
6q21 | Start:109285485 End:109285485
Sequence
A2VCL2.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC162P ]
External IDs
Hgnc ID: 21565 EntrezGene ID: 221262 Ensembl ID: ENSG00000203799
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC162P ]
Reference Source
http://www.nextprot.org

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalian with experimental evidenceCC162_HUMANCC162_MOUSE90791072.53100.3324461906190801245
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-3 of 3 items.

PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
LAQERSVKLDALQR0.00622651020657754,Mascot:expectation;24.43,Mascot:score;PXD001326_39769_10466_A2VCL2_LAQERSVKLDALQRPXD001326;tumor_cyt_1.mgf;index=34340
LAQERSVKLDALQR0.00642717913243395,Mascot:expectation;23.37,Mascot:score;PXD001326_39770_9382_A2VCL2_LAQERSVKLDALQRPXD001326;tumor_cyt_3.mgf;index=29478
LAQERSVKLDALQR23.51,Mascot:score;0.012901173158448,Mascot:expectation;PXD001326_39771_9524_A2VCL2_LAQERSVKLDALQRPXD001326;tumor_cyt_3b.mgf;index=33283
Evidence File
/mnt/mpp/ms_data/A2VCL2_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-1 of 1 item.

Proteomics DB

Evidence File
/mnt/mpp/ms_data/A2VCL2_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB