ANKFN1:Ankyrin repeat and fibronectin type-III domain-containing protein 1

Gene Name
Ankyrin repeat and fibronectin type-III domain-containing protein 1
Protein ID
Q8N957
Chromosome ID
17
HPP Status
2
Protein Name
Ankyrin repeat and fibronectin type-III domain-containing protein 1
Synonyms

ankyrin repeat and fibronectin type-III domain-containing protein 1

ankyrin-repeat and fibronectin type III domain containing 1


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ANKFN1 ]
Chromosomal Position
17q22 | Start:56110958 End:56110958
Sequence
Q8N957.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ANKFN1 ]
External IDs
Hgnc ID: 26766 EntrezGene ID: 162282 Ensembl ID: ENSG00000153930
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ANKFN1 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
All Reviewed HumanANKF1_HUMANANKF1_HUMAN763763100100001763176301527
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
ANKF1_HUMANIPR002110GO:0005515RepeatAnkyrin repeatMolecular Functionprotein binding
ANKF1_HUMANIPR003961GO:0005515DomainFibronectin, type IIIMolecular Functionprotein binding
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q8N957_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


Showing 1-3 of 3 items.

PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
MTQQMQNLHLCQSK13.12,Spectrum Mill peptide score;PRD000668_22167_1096_Q8N957_MTQQMQNLHLCQSKPRD000668;PRIDE_Exp_Complete_Ac_22167.xml;spectrum=1096
KHSAPSSPNAAK0.0239627802086425,Mascot:expectation;28.71,Mascot:score;PXD003271_59997_2856_Q8N957_KHSAPSSPNAAKPXD003271;MR204.mgf;index=2367
KHSAPSSPNAAK0.0306275180396155,Mascot:expectation;26.79,Mascot:score;PXD003271_59849_159_Q8N957_KHSAPSSPNAAKPXD003271;MR7B.mgf;index=5025
Evidence File
/mnt/mpp/ms_data/Q8N957_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-1 of 1 item.

Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q8N957_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB