C4orf47:UPF0602 protein C4orf47

Gene Name
UPF0602 protein C4orf47
Protein ID
A7E2U8
Chromosome ID
4
HPP Status
1
Protein Name
UPF0602 protein C4orf47
Synonyms

chromosome 4 open reading frame 47

UPF0602 protein C4orf47


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C4ORF47 ]
Chromosomal Position
4q35.1 | Start:185426249 End:185426249
Sequence
A7E2U8.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C4ORF47 ]
External IDs
Hgnc ID: 34346 EntrezGene ID: 441054 Ensembl ID: ENSG00000205129
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C4ORF47 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianCD047_HUMANCD047_BOVIN30930983.82100500130913096.00E-148520
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-20 of 50 items.

gpmDB

Peptide SequenceEvidence LevelLog ENumber Of ObservationSpectraAccession IDProteotypicityAnnotation
IFEGEGYINLNQVRgreen-11.0421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-11.0421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.9421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.9421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.7421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.7421ENSP00000368127Proteotypic
AGTFDPYPSHSADPYVAKgreen-9.2211ENSP00000368127Proteotypic
AGTFDPYPSHSADPYVAKgreen-9.2211ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.2421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.2421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.1421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.1421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.1421ENSP00000368127Proteotypic
IFEGEGYINLNQVRgreen-9.1421ENSP00000368127Proteotypic
AGTFDPYPSHSADPYVAKgreen-8.8211ENSP00000368127Proteotypic
AGTFDPYPSHSADPYVAKgreen-8.8211ENSP00000368127Proteotypic
AGTFDPYPSHSADPYVAKgreen-8.7211ENSP00000368127Proteotypic
AGTFDPYPSHSADPYVAKgreen-8.7211ENSP00000368127Proteotypic
QFSHSADFYDAAKgreen-8.3141ENSP00000368127Proteotypic
QFSHSADFYDAAKgreen-8.3141ENSP00000368127Proteotypic
Evidence File
/mnt/mpp/ms_data/A7E2U8_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM