TTC29:Tetratricopeptide repeat protein 29

Gene Name
Tetratricopeptide repeat protein 29
Protein ID
Q8NA56
Chromosome ID
4
HPP Status
1
Protein Name
Tetratricopeptide repeat protein 29
Synonyms

TPR repeat protein 29

NYD-SP14

TBPP2A

tetratricopeptide repeat protein 29

testis development protein NYD-SP14

Testis development protein NYD-SP14

Protein TBPP2A

tetratricopeptide repeat domain 29


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TTC29 ]
Chromosomal Position
4q31.22 | Start:146706638 End:146706638
Sequence
Q8NA56.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TTC29 ]
External IDs
Hgnc ID: 29936 EntrezGene ID: 83894 Ensembl ID: ENSG00000137473
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TTC29 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianTTC29_HUMANTTC29_MACFA47546095.8796.8419016475164750.00E+00914
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
TTC29_HUMANIPR011990GO:0005515DomainTetratricopeptide-like helicalMolecular Functionprotein binding
TTC29_HUMANIPR019734GO:0005515RepeatTetratricopeptide repeatMolecular Functionprotein binding
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-20 of 24 items.

gpmDB

Peptide SequenceEvidence LevelLog ENumber Of ObservationSpectraAccession IDProteotypicityAnnotation
GNIEPDPVTEEFRgreen-10.8341ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-10.8341ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-8.7341ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-8.7341ENSP00000316740Proteotypic
GLSKEEVAAYRgreen-8.4631ENSP00000316740Proteotypic
GLSKEEVAAYRgreen-8.4631ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-8.4341ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-8.4341ENSP00000316740Proteotypic
GLSKEEVAAYRgreen-8.0631ENSP00000316740Proteotypic
GLSKEEVAAYRgreen-8.0631ENSP00000316740Proteotypic
SLFWLQKPLEEQPDKLDYLYHYLTRgreen-7.751ENSP00000316740Proteotypic
SLFWLQKPLEEQPDKLDYLYHYLTRgreen-7.751ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-7.7341ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-7.7341ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-7.6341ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-7.6341ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-6.6341ENSP00000316740Proteotypic
TTLPPLPMTRPKgreen-6.6251ENSP00000316740Proteotypic
GNIEPDPVTEEFRgreen-6.6341ENSP00000316740Proteotypic
TTLPPLPMTRPKgreen-6.6251ENSP00000316740Proteotypic
Evidence File
/mnt/mpp/ms_data/Q8NA56_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


Showing 1-5 of 5 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
EKDDIDHYLEVNFKMaxquant163.801350308211-1
DDIDHYLEVNFKMaxquant148.1801349673196-1
EKDDIDHYLEVNFKMaxquant131.0801350308210-1
EEVAAYRMaxquant122.9801350177623-1
GLSKEEVAAYRMaxquant121.6801351188857-1
Evidence File
/mnt/mpp/ms_data/Q8NA56_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB