ABCC13:Putative ATP-binding cassette sub-family C member 13

Gene Name
Putative ATP-binding cassette sub-family C member 13
Protein ID
Q9NSE7
Chromosome ID
21
HPP Status
2
Protein Name
Putative ATP-binding cassette sub-family C member 13
Synonyms

PRED6

ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene

ATP-binding cassette, sub-family C (CFTR/MRP), member 13

C21orf73

ATP-binding cassette protein C13


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ABCC13 ]
Chromosomal Position
21q11.2 | Start:14236206 End:14236206
Sequence
Q9NSE7.fasta
Description

Entrez Gene Summary for ABCC13
This gene is a member of the superfamily of genes encoding ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, and White). This family member is part of the MRP subfamily, which is involved in multi-drug resistance, but the human locus is now thought to be a pseudogene incapable of encoding a functional ABC protein. Alternative splicing results in multiple transcript variants; however, not all variants have been fully described. (provided by RefSeq, Jul 2008)

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ABCC13 ]
External IDs
Hgnc ID: 16022 EntrezGene ID: 150000 Ensembl ID: ENSG00000243064
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ABCC13 ]
Reference Source
http://www.nextprot.org

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
ABCCD_HUMANIPR001140GO:0005524DomainABC transporter, transmembrane domainMolecular FunctionATP binding
ABCCD_HUMANIPR001140GO:0006810DomainABC transporter, transmembrane domainBiological Processtransport
ABCCD_HUMANIPR001140GO:0016021DomainABC transporter, transmembrane domainCellular Componentintegral to membrane
ABCCD_HUMANIPR001140GO:0055085DomainABC transporter, transmembrane domainBiological Processtransmembrane transport
ABCCD_HUMANIPR011527GO:0005524DomainABC transporter, transmembrane domain, type 1Molecular FunctionATP binding
ABCCD_HUMANIPR011527GO:0006810DomainABC transporter, transmembrane domain, type 1Biological Processtransport
ABCCD_HUMANIPR011527GO:0016021DomainABC transporter, transmembrane domain, type 1Cellular Componentintegral to membrane
ABCCD_HUMANIPR011527GO:0055085DomainABC transporter, transmembrane domain, type 1Biological Processtransmembrane transport
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

KEGG Pathways

Pathway IDDatabase NamePathway Name
hsa02010KEGG PATHWAYABC transporters
hsa04977KEGG PATHWAYVitamin digestion and absorption
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q9NSE7_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/Q9NSE7_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q9NSE7_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB