CCDC181:Coiled-coil domain-containing protein 181

Gene Name
Coiled-coil domain-containing protein 181
Protein ID
Q5TID7
Chromosome ID
1
HPP Status
2
Protein Name
Coiled-coil domain-containing protein 181
Synonyms

C1orf114

chromosome 1 open reading frame 114

coiled-coil domain containing 181

coiled-coil domain-containing protein 181


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC181 ]
Chromosomal Position
1q24.2 | Start:169394870 End:169394870
Sequence
Q5TID7.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC181 ]
External IDs
Hgnc ID: 28051 EntrezGene ID: 57821 Ensembl ID: ENSG00000117477
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=CCDC181 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
19536175Observational study of gene-disease association. (HuGE Navigator)2009-08-12
23918943High C1orf114 methylation was associated with biochemical recurrence in prostate cancer.2013-11-23
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianCC181_HUMANCC181_PONAB50950995.87100210150915090.00E+00889
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q5TID7_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/Q5TID7_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-2 of 2 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
EENINQDLKMaxquant145.720184555941
TILVERDGKMaxquant123.3508520593842385
Evidence File
/mnt/mpp/ms_data/Q5TID7_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB