SERTM1:Serine-rich and transmembrane domain-containing protein 1

Gene Name
Serine-rich and transmembrane domain-containing protein 1
Protein ID
A2A2V5
Chromosome ID
13
HPP Status
4
Protein Name
Serine-rich and transmembrane domain-containing protein 1
Synonyms

C13orf36

serine-rich and transmembrane domain-containing 1

chromosome 13 open reading frame 36

serine-rich and transmembrane domain-containing protein 1

serine-rich and transmembrane domain containing 1


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=SERTM1 ]
Chromosomal Position
13q13.3 | Start:36673912 End:36673912
Sequence
A2A2V5.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=SERTM1 ]
External IDs
Hgnc ID: 33792 EntrezGene ID: 400120 Ensembl ID: ENSG00000180440
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=SERTM1 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianSRTM1_HUMANSRTM1_MOUSE10710796.2610040110711072.00E-27117
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/A2A2V5_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/A2A2V5_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive