AKNAD1:Protein AKNAD1

Gene Name
Protein AKNAD1
Protein ID
Q5T1N1
Chromosome ID
1
HPP Status
2
Protein Name
Protein AKNAD1
Synonyms

AKNA domain containing 1

C1orf62

protein AKNAD1

chromosome 1 open reading frame 62


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=AKNAD1 ]
Chromosomal Position
1p13.3 | Start:108815898 End:108815898
Sequence
Q5T1N1.fasta
Description

Entrez Gene Summary for AKNAD1
This gene encodes a protein which contains a domain found in an AT-hook-containing transcription factor. Alternative splicing results in multiple transcript variants. (provided by RefSeq, May 2012)

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=AKNAD1 ]
External IDs
Hgnc ID: 28398 EntrezGene ID: 254268 Ensembl ID: ENSG00000162641
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=AKNAD1 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
20379614Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)2010-06-30
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianAKND1_HUMANAKND1_MACFA83674987.7289.59883174917450.00E+001180
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-1 of 1 item.

PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
ETTDQMIK15.73,Mascot:score;0.0334406572320062,Mascot:expectation;PXD002720_56415_997_Q5T1N1_ETTDQMIKPXD002720;TOTAL MGF FILE.mgf;index=135170
Evidence File
/mnt/mpp/ms_data/Q5T1N1_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-2 of 2 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
ITENAANKKMascot5.0630746751549-1
TIAEDLAKMascot6.6429108503937255
Evidence File
/mnt/mpp/ms_data/Q5T1N1_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB