ZNF683:Zinc finger protein 683

Gene Name
Zinc finger protein 683
Protein ID
Q8IZ20
Chromosome ID
1
HPP Status
1
Protein Name
Zinc finger protein 683
Synonyms

zinc finger protein 683

"hypothetical protein MGC33414"

hypothetical protein MGC33414


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF683 ]
Chromosomal Position
1p36.11 | Start:26361634 End:26361634
Sequence
Q8IZ20.fasta
Description

UniProtKB Summary for ZNF683
Function: May be involved in transcriptional regulation

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF683 ]
External IDs
Hgnc ID: 28495 EntrezGene ID: 257101 Ensembl ID: ENSG00000176083
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF683 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
26179882These data implicate Hobit as a novel transcriptional regulator in quiescent human effector-type CD8(+) T cells that regulates their immediate effector functions.2016-01-16
26440905Hobit's function in human T cells is highly adapted to lifelong, periodic challenges with varying, physiological doses of pathogens.2016-01-16
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalian with experimental evidenceZN683_HUMANPRDM1_MOUSE52422751.5443.327062514575187245.00E-56214
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

InterProScan Annotation

Uniprot IDInterpro IDGo IDTypeNameCategoryDescription
ZN683_HUMANIPR013087GO:0003676DomainZinc finger C2H2-type/integrase DNA-binding domainMolecular Functionnucleic acid binding
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q8IZ20_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/Q8IZ20_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q8IZ20_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB