TRNP1:TMF-regulated nuclear protein 1

Gene Name
TMF-regulated nuclear protein 1
Protein ID
Q6NT89
Chromosome ID
1
HPP Status
2
Protein Name
TMF-regulated nuclear protein 1
Synonyms

TRNP

TMF-regulated nuclear protein 1

chromosome 1 open reading frame 225

TMF1-regulated nuclear protein 1

C1orf225

TNRP


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TRNP1 ]
Chromosomal Position
1p36.11 | Start:26993707 End:26993707
Sequence
Q6NT89.fasta
Description

UniProtKB Summary for TRNP1
Function: DNA-binding factor that regulates the expression of a subset of genes and plays a key role in tangential, radial, and lateral expansion of the brain neocortex. Regulates neural stem cells proliferation and the production of intermediate neural progenitors and basal radial glial cells affecting the process of cerebral cortex gyrification. May control the proliferation rate of cells by regulating their progression through key cell-cycle transition points (By similarity)

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TRNP1 ]
External IDs
Hgnc ID: 34348 EntrezGene ID: 388610 Ensembl ID: ENSG00000253368
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=TRNP1 ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
23622239TRNP1 expression levels exhibit regional differences in the cerebral cortex of human fetuses, anticipating radial or tangential expansion.2013-06-29
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation



Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-2 of 2 items.

gpmDB

Peptide SequenceEvidence LevelLog ENumber Of ObservationSpectraAccession IDProteotypicityAnnotation
WRQGASGIAGLAGPGGGSGAAAGAGGRgreen-14.7111ENSP00000429216Proteotypic
WRQGASGIAGLAGPGGGSGAAAGAGGRgreen-14.7111ENSP00000429216Proteotypic
Evidence File
/mnt/mpp/ms_data/Q6NT89_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/Q6NT89_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Showing 1-2 of 2 items.

Proteomics DB

Peptide SequenceSearch EngineScoreThreshold ScoreIdentification IDExperiment IDAnnotation
LLEVEGRMaxquant126.24012250257423002
LVSELESRMaxquant123.980246260613271
Evidence File
/mnt/mpp/ms_data/Q6NT89_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB