BIVM:Basic immunoglobulin-like variable motif-containing protein

Gene Name
Basic immunoglobulin-like variable motif-containing protein
Protein ID
Q86UB2
Chromosome ID
13
HPP Status
2
Protein Name
Basic immunoglobulin-like variable motif-containing protein
Synonyms

basic, immunoglobulin-like variable motif containing

basic immunoglobulin-like variable motif-containing protein


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=BIVM ]
Chromosomal Position
13q33.1 | Start:102799049 End:102799049
Sequence
Q86UB2.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=BIVM ]
External IDs
Hgnc ID: 16034 EntrezGene ID: 54841 Ensembl ID: ENSG00000134897
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=BIVM ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
19773279Observational study of gene-disease association. (HuGE Navigator)2009-12-02
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
Reviewed non-human mammalianBIVM_HUMANBIVM_MOUSE50350387.48100621150315020.00E+00903
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




Showing 1-8 of 8 items.

gpmDB

Peptide SequenceEvidence LevelLog ENumber Of ObservationSpectraAccession IDProteotypicityAnnotation
SFSASFHQDSAWKred-6.5121ENSP00000412794Proteotypic
SFSASFHQDSAWKred-6.5121ENSP00000257336Proteotypic
SFSASFHQDSAWKred-6.5121ENSP00000412794Proteotypic
SFSASFHQDSAWKred-6.5121ENSP00000257336Proteotypic
RNSGYQGYSDYDGNDred-6.221ENSP00000412794Proteotypic
RNSGYQGYSDYDGNDred-6.221ENSP00000257336Proteotypic
RNSGYQGYSDYDGNDred-6.221ENSP00000412794Proteotypic
RNSGYQGYSDYDGNDred-6.221ENSP00000257336Proteotypic
Evidence File
/mnt/mpp/ms_data/Q86UB2_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


MaxQB

Evidence File
/mnt/mpp/ms_data/Q86UB2_maxqb.txt
Reference
Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068.
http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/Q86UB2_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q86UB2_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB