SLC22A18AS:Beckwith-Wiedemann syndrome chromosomal region 1 candidate gene B protein

Gene Name
Beckwith-Wiedemann syndrome chromosomal region 1 candidate gene B protein
Protein ID
Q8N1D0
Chromosome ID
11
HPP Status
2
Protein Name
Beckwith-Wiedemann syndrome chromosomal region 1 candidate gene B protein
Synonyms

BWR1B

organic cation transporter-like 2 antisense

Beckwith-Wiedemann syndrome chromosome region 1, candidate b

solute carrier family 22 member 1-like antisense protein

Beckwith-Wiedemann region 1B

solute carrier family 22 (organic cation transporter), member 1-like antisense

ORCTL2S

BWSCR1B

Organic cation transporter-like protein 2 antisense protein

p27-Beckwith-Wiedemann region 1 B

solute carrier family 22 member 18 antisense protein

beckwith-Wiedemann syndrome chromosomal region 1 candidate gene B protein

Solute carrier family 22 member 18 antisense protein

p27-BWR1B

organic cation transporter-like protein 2 antisense protein

solute carrier family 22 (organic cation transporter), member 18 antisense

SLC22A1LS

Solute carrier family 22 member 1-like antisense protein


[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=SLC22A18AS ]
Chromosomal Position
11p15.4 | Start:2887780 End:2887780
Sequence
Q8N1D0.fasta
Description

[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=SLC22A18AS ]
External IDs
Hgnc ID: 10965 EntrezGene ID: 5003 Ensembl ID: ENSG00000254827
[Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=SLC22A18AS ]
Reference Source
http://www.nextprot.org

Gene Reference Into Function (GeneRIF)


PubMed IDGeneRIF TextLast Update
15175115Results suggest imprinting of the paternal allele of SLC22A1LS gene in five fetal tissues: brain, liver, placenta, kidneys and lungs.2010-01-21
18721868SLC22A18/SLC22A18AS genes are a sense-antisense pair located at human chromosome segment 11p15.5. These genes are paternally imprinted.2010-01-21
18721868Using antibodies generated in rabbit, immunoprecipitation and Western blot analyses, translation of a 253-aa ORF at very low levels occurred. The translated protein was mainly localized in the cytoplasm.2008-09-04
Reference
http://www.ncbi.nlm.nih.gov/gene/about-generif
ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser



Relevant citations within the PubMed literature

         

Putative/known Functions



Localisation



Homologues, Orthologues, Paralogues and Family



Sequence Similarity and Functional Annotation


Sequence Similarity

Db NameQuery UniSubject UniSequence LengthAlignment LengthIdentityCoverageMismatchesGap OpeningsQuery StartQuery EndSubject StartSubject EndEvalueBit Score
All Reviewed HumanBWR1B_HUMANBWR1B_HUMAN25325310010000125312538.00E-131462
Reference
Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications



Protein Protein Interactions



Best Available Mass Spectra without FDR




gpmDB

Evidence File
/mnt/mpp/ms_data/Q8N1D0_gpmdb.txt
Reference
Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803.
http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM


PRIDE

Peptide SequenceScoresPride IDSpectrum IDAnnotation
No results found.
Evidence File
/mnt/mpp/ms_data/Q8N1D0_pridedb.txt
Reference
Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456.
https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive


Proteomics DB

Evidence File
/mnt/mpp/ms_data/Q8N1D0_protdb.txt
Reference
Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7.
https://www.proteomicsdb.org/ ">Proteomics DB