C9orf66:Uncharacterized protein C9orf66

Gene Name Uncharacterized protein C9orf66	Protein ID Q5T8R8	Chromosome ID 9	HPP Status 2
Protein Name Uncharacterized protein C9orf66		Synonyms chromosome 9 open reading frame 66 uncharacterized protein C9orf66 [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C9ORF66 ]
Chromosomal Position 9p24.3 | Start:212824 End:212824		Sequence Q5T8R8.fasta
Description [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C9ORF66 ]
External IDs Hgnc ID: 26436 EntrezGene ID: 157983 Ensembl ID: ENSG00000183784 [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=C9ORF66 ]
Reference Source http://www.nextprot.org

OMICSDI Browser

Relevant citations within the PubMed literature

Putative/known Functions

Localisation

Homologues, Orthologues, Paralogues and Family

Sequence Similarity and Functional Annotation

Sequence Similarity

Post Translational Modifications

Protein Protein Interactions

Best Available Mass Spectra without FDR

gpmDB

All

	Peptide Sequence	Evidence Level	Log E	Number Of Observation	Spectra	Accession ID	Proteotypicity	Annotation
No results found.

Evidence File /mnt/mpp/ms_data/Q5T8R8_gpmdb.txt

Reference Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803. http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM

Showing 1-20 of 28 items.

gpmDB

All

	Peptide Sequence	Evidence Level	Log E	Number Of Observation	Spectra	Accession ID	Proteotypicity	Annotation
	HSVARPTR	red	-5.0	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-5.0	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-4.7	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-4.7	16	1	ENSP00000329823	Proteotypic
	STEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLR	red	-2.6	3	1	ENSP00000329823	Proteotypic
	STEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLR	red	-2.6	3	1	ENSP00000329823	Proteotypic
	STEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLR	red	-1.7	3	1	ENSP00000329823	Proteotypic
	STEILGEDLAGPSAGAAARPAAPPPQPREPGAPGLR	red	-1.7	3	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-1.5	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-1.5	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-1.5	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-1.5	16	1	ENSP00000329823	Proteotypic
	MDSSGLGPCSEAPLHTSAGLSGRNLR	red	-1.4	1	1	ENSP00000329823	Proteotypic
	SRSTEILGEDLAGPSAGAAARPAAPPP	red	-1.4	1	1	ENSP00000329823	Proteotypic
	MDSSGLGPCSEAPLHTSAGLSGRNLR	red	-1.4	1	1	ENSP00000329823	Proteotypic
	SRSTEILGEDLAGPSAGAAARPAAPPP	red	-1.4	1	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-1.4	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-1.4	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-1.3	16	1	ENSP00000329823	Proteotypic
	HSVARPTR	red	-1.3	16	1	ENSP00000329823	Proteotypic

Evidence File /mnt/mpp/ms_data/Q5T8R8_gpmdb.txt

Reference Fenyö, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056–2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803. http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM

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Showing 1-2 of 2 items.

PRIDE

All

	Peptide Sequence	Scores	Pride ID	Spectrum ID	Annotation
	NLEGGAGEVVR	23.15,Mascot:score;0.0112821509044601,Mascot:expectation;	PXD000039_27365_18088_Q5T8R8_NLEGGAGEVVR	PXD000039;PRIDE_Exp_Complete_Ac_27365.xml;spectrum=18088
	NLEGGAGEVVR	23.15,Mascot:score;0.0112821509044601,Mascot:expectation;	PXD000039_27365_18088_Q5T8R8_NLEGGAGEVVR	PXD000039;PRIDE_Exp_Complete_Ac_27365.xml;spectrum=18088

Evidence File /mnt/mpp/ms_data/Q5T8R8_pridedb.txt

Reference Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456. https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive

Showing 1-20 of 32 items.

PRIDE

All

	Peptide Sequence	Scores	Pride ID	Spectrum ID	Annotation
	NLEGGAGEVVR	23.15,Mascot:score;0.0112821509044601,Mascot:expectation;	PXD000039_27365_18088_Q5T8R8_NLEGGAGEVVR	PXD000039;PRIDE_Exp_Complete_Ac_27365.xml;spectrum=18088
	NLEGGAGEVVR	23.15,Mascot:score;0.0112821509044601,Mascot:expectation;	PXD000039_27365_18088_Q5T8R8_NLEGGAGEVVR	PXD000039;PRIDE_Exp_Complete_Ac_27365.xml;spectrum=18088
	NLEGGAGEVVR	15.57,Mascot:score;0.0419633841104152,Mascot:expectation;	PXD000039_27333_23425_Q5T8R8_NLEGGAGEVVR	PXD000039;PRIDE_Exp_Complete_Ac_27333.xml;spectrum=23425
	VRARSSDGR	17.46,Mascot:score;0.347664305608691,Mascot:expectation;	PXD000039_27367_4180_Q5T8R8_VRARSSDGR	PXD000039;PRIDE_Exp_Complete_Ac_27367.xml;spectrum=4180
	NLEGGAGEVVR	0.57247773991057,Mascot:expectation;8.87,Mascot:score;	PXD000039_27365_18425_Q5T8R8_NLEGGAGEVVR	PXD000039;PRIDE_Exp_Complete_Ac_27365.xml;spectrum=18425
	NLEGGAGEVVR	0.57247773991057,Mascot:expectation;8.87,Mascot:score;	PXD000039_27365_18425_Q5T8R8_NLEGGAGEVVR	PXD000039;PRIDE_Exp_Complete_Ac_27365.xml;spectrum=18425
	HSVARPTR	0.046861853,MS-GF:EValue;47.0,MS-GF:RawScore;0.009127789,MS-GF:PepQValue;60.0,MS-GF:DeNovoScore;0.006620081,MS-GF:QValue;	PXD002089_51887_2526_Q5T8R8_HSVARPTR	PXD002089;TCGA-AG-A036-01A-22_W_VU_20120806_A0218_1G_R_FR13.mzML;controllerType=0 controllerNumber=1 scan=2082
	QSGHGPPAVR	31.0,MS-GF:RawScore;0.014012372,MS-GF:EValue;0.0034802784,MS-GF:PepQValue;38.0,MS-GF:DeNovoScore;0.0021134203,MS-GF:QValue;	PXD002083_51080_130_Q5T8R8_QSGHGPPAVR	PXD002083;TCGA-AA-A00K-01A-12_W_VU_20121213_A0218_7H_R_FR03.mzML;controllerType=0 controllerNumber=1 scan=6137
	EPGAPGLRR	43.0,MS-GF:RawScore;0.018165018,MS-GF:EValue;50.0,MS-GF:DeNovoScore;0.004226096,MS-GF:PepQValue;0.0019970045,MS-GF:QValue;	PXD002088_51785_1762_Q5T8R8_EPGAPGLRR	PXD002088;TCGA-AG-A01J-01A-22_W_VU_20121231_A0218_8F_R_FR10.mzML;controllerType=0 controllerNumber=1 scan=8933
	HSVARPTR	0.0015337423,MS-GF:QValue;58.0,MS-GF:DeNovoScore;0.0035702894,MS-GF:EValue;0.002269289,MS-GF:PepQValue;53.0,MS-GF:RawScore;	PXD002088_51753_32_Q5T8R8_HSVARPTR	PXD002088;TCGA-AG-A01W-01A-23_W_VU_20121116_A0218_6C_R_FR15.mzML;controllerType=0 controllerNumber=1 scan=2750
	LPGNVGK	22.77,Mascot score;	PXD000529_31601_605_Q5T8R8_LPGNVGK	PXD000529;PRIDE_Exp_Complete_Ac_31601.xml;spectrum=605
	NLEGGAGEVVRGR	22.23,Mascot:score;	PXD003409_60782_22123_Q5T8R8_NLEGGAGEVVRGR	PXD003409;HUVEC_ne_stim_6a.mgf;index=67371
	GARADDRR	22.88,Mascot:score;	PXD003406_60694_23401_Q5T8R8_GARADDRR	PXD003406;HUVEC_cyt_con_2b.mgf;index=5535
	GAESGGLARR	15.65,Mascot:score;	PXD003406_60697_16173_Q5T8R8_GAESGGLARR	PXD003406;HUVEC_cyt_con_1a_3.mgf;index=9961
	ALPGAADLR	15.23,Mascot:score;	PXD003406_60691_16347_Q5T8R8_ALPGAADLR	PXD003406;HUVEC_cyt_con_1b_3.mgf;index=17736
	SALETSAFPPSKPKSPR	27.52,Mascot:score;	PXD003407_60731_25980_Q5T8R8_SALETSAFPPSKPKSPR	PXD003407;HUVEC_cyt_stim_6a.mgf;index=64083
	SALETSAFPPSKPKSPR	26.87,Mascot:score;	PXD003407_60711_571_Q5T8R8_SALETSAFPPSKPKSPR	PXD003407;HUVEC_cyt_stim_7b.mgf;index=5169
	GGRGPSAELASR	16.2,Mascot:score;	PXD003408_60734_27641_Q5T8R8_GGRGPSAELASR	PXD003408;HUVEC_ne_con_6a.mgf;index=39948
	HSVARPTR	29.64,Mascot score;	PXD000535_31924_1588_Q5T8R8_HSVARPTR	PXD000535;PRIDE_Exp_Complete_Ac_31924.xml;spectrum=1588
	HSVARPTR	30.61,Mascot score;	PXD000535_31875_2007_Q5T8R8_HSVARPTR	PXD000535;PRIDE_Exp_Complete_Ac_31875.xml;spectrum=2007

Evidence File /mnt/mpp/ms_data/Q5T8R8_pridedb.txt

Reference Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456. https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive

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Proteomics DB

All

	Peptide Sequence	Search Engine	Score	Threshold Score	Identification ID	Experiment ID	Annotation
No results found.

Evidence File /mnt/mpp/ms_data/Q5T8R8_protdb.txt

Reference Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7. https://www.proteomicsdb.org/ ">Proteomics DB

Showing 1-11 of 11 items.

Proteomics DB

All

	Peptide Sequence	Search Engine	Score	Threshold Score	Identification ID	Experiment ID	Annotation
	GPSAELASRYWGR	Maxquant	86.114	0	790423022	2296
	LPGNVGK	Maxquant	79.027	0	37145613	167
	LPGNVGK	Maxquant	74.832	0	899845	122
	AAGGVLPVDLERER	Mascot	15.31	31	294545159	117
	AGEVGNHPR	Mascot	15.19	30	1148864156	2427
	LHLPEAAR	Maxquant	55.902	0	1295958848	-1
	EPGAPGLR	Mascot	15.26	28	181481206	258
	LPGNVGK	Maxquant	50.039	0	272734620	-1
	GAESGGLAR	Mascot	28.77	32	1426952505	-1
	HPAWRAGSGGR	Maxquant	31.431	0	15157131	-1
	HSVARPTR	Mascot	29.06	29	773264483	279

Evidence File /mnt/mpp/ms_data/Q5T8R8_protdb.txt

Reference Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7. https://www.proteomicsdb.org/ ">Proteomics DB