ARID3C:AT-rich interactive domain-containing protein 3C
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Gene Name
AT-rich interactive domain-containing protein 3C |
Protein ID
A6NKF2 |
Chromosome ID
9 |
HPP Status
3 |
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Protein Name
AT-rich interactive domain-containing protein 3C |
Synonyms
ARID domain-containing protein 3C Brightlike AT-rich interactive domain-containing protein 3C AT rich interactive domain 3C (BRIGHT-like) AT rich interactive domain 3C (BRIGHT- like) [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ARID3C  ] |
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Chromosomal Position
9p13.3 | Start:34621379 End:34621379 |
Sequence
A6NKF2.fasta |
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Description
Entrez Gene Summary for ARID3CThis gene is a member of the ARID (AT-rich interaction domain) family of proteins. The ARID domain is a helix-turn-helix motif-based DNA-binding domain. ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation and possibly in chromatin structure modification. (provided by RefSeq, Jul 2008) [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ARID3C ] |
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External IDs
Hgnc ID: 21209 EntrezGene ID: 138715 Ensembl ID: ENSG00000205143 [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ARID3C ] |
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Reference Source
http://www.nextprot.org |
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Gene Reference Into Function (GeneRIF)
| PubMed ID | GeneRIF Text | Last Update |
|---|---|---|
| 21955986 | this report introduces Brightlike as an additional functional member of the family of ARID proteins, which should be considered in regulatory circuits, previously ascribed to be mediated by Bright.[ARID3C] | 2012-09-14 |
| Reference http://www.ncbi.nlm.nih.gov/gene/about-generif ftp://ftp.ncbi.nih.gov/gene/GeneRIF/ | ||
OMICSDI Browser
Relevant citations within the PubMed literature
Putative/known Functions
Localisation
Homologues, Orthologues, Paralogues and Family
Sequence Similarity and Functional Annotation
Sequence Similarity
| Db Name | Query Uni | Subject Uni | Sequence Length | Alignment Length | Identity | Coverage | Mismatches | Gap Openings | Query Start | Query End | Subject Start | Subject End | Evalue | Bit Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Reviewed non-human mammalian with experimental evidence | ARI3C_HUMAN | ARI3A_MOUSE | 412 | 336 | 50.6 | 81.55 | 95 | 12 | 97 | 383 | 227 | 540 | 5E-75 | 277 |
| Reference Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83. | ||||||||||||||
InterProScan Annotation
| Uniprot ID | Interpro ID | Go ID | Type | Name | Category | Description |
|---|---|---|---|---|---|---|
| ARI3C_HUMAN | IPR001606 | GO:0003677 | Domain | ARID/BRIGHT DNA-binding domain | Molecular Function | DNA binding |
| ARI3C_HUMAN | IPR001606 | GO:0005622 | Domain | ARID/BRIGHT DNA-binding domain | Cellular Component | intracellular |
| Reference Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83. | ||||||