ZNF804B:Zinc finger protein 804B

Gene Name Zinc finger protein 804B	Protein ID A4D1E1	Chromosome ID 7	HPP Status 2
Protein Name Zinc finger protein 804B		Synonyms zinc finger 804B zinc finger protein 804B zinc finger 804B [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF804B ]
Chromosomal Position 7q21.13 \| Start:88759368 End:88759368		Sequence A4D1E1.fasta
Description [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF804B ]
External IDs Hgnc ID: 21958 EntrezGene ID: 219578 Ensembl ID: ENSG00000182348 [Reference: http://www.genecards.org/cgi-bin/carddisp.pl?gene=ZNF804B ]
Reference Source http://www.nextprot.org

Gene Reference Into Function (GeneRIF)

PubMed ID	GeneRIF Text	Last Update
20379614	Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)	2010-06-30
20547088	Observational study of genotype prevalence. (HuGE Navigator)	2010-06-30
21079607	Observational study and genome-wide association study of gene-disease association. (HuGE Navigator)	2010-12-05
Reference http://www.ncbi.nlm.nih.gov/gene/about-generif ftp://ftp.ncbi.nih.gov/gene/GeneRIF/

OMICSDI Browser

Relevant citations within the PubMed literature

Pubmed ID	Title	Author	Publish Date
20547088	A Japanese-specific allele in the GALNT11 gene. view abstract	Yuasa I, Umetsu K, Matsusue A, Nishimukai H, Harihara S, Fukumori Y, Saitou N, Jin F, Chattopadhyay PK, Henke L, Henke J	2010-06-16

Putative/known Functions

Molecular function

Localisation

Homologues, Orthologues, Paralogues and Family

Orthologues

Paralogues

Family

Sequence Similarity and Functional Annotation

Sequence Similarity

Db Name	Query Uni	Subject Uni	Sequence Length	Alignment Length	Identity	Coverage	Mismatches	Gap Openings	Query Start	Query End	Subject Start	Subject End	Evalue	Bit Score
Reviewed non-human mammalian	Z804B_HUMAN	Z804A_MOUSE	1349	255	54.51	18.9	88	8	1	245	1	237	2E-65	249
Reference Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

InterProScan Annotation

Uniprot ID	Interpro ID	Go ID	Type	Name	Category	Description
Z804B_HUMAN	IPR007087	GO:0046872	Domain	Zinc finger, C2H2	Molecular Function	metal ion binding
Reference Islam MT, Garg G, Hancock WS, Risk BA, Baker MS, Ranganathan S (2014) Protannotator: A Semiautomated Pipeline for Chromosome-Wise Functional Annotation of the "Missing" Human Proteome. J Proteome Res. 13, 76-83.

Post Translational Modifications

	Ptm Name	Ptm Site	Evidence
No results found.

Protein Protein Interactions

Best Available Mass Spectra without FDR

gpmDB

	Peptide Sequence	Evidence Level	Log E	Number Of Observation	Spectra	Accession ID	Proteotypicity	Annotation
No results found.

Evidence File /mnt/mpp/ms_data/A4D1E1_gpmdb.txt
Reference FenyÃ¶, David; Beavis, Ronald C. (2015). "The GPMDB REST interface". Bioinformatics 31 (12): 2056â€“2058. doi:10.1093/bioinformatics/btv107. ISSN 1367-4803. http://gpmdb.thegpm.org/ ">Global Proteome Machine Database - THE GPM

Peptide Sequence	Evidence Level	Log E	Number Of Observation	Spectra	Accession ID	Proteotypicity
HQEFDNHINSYDHAHKQR	green	-15.0	8	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHKQR	green	-15.0	8	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
HQEFDNHINSYDHAHK	green	-15.0	1525	1	ENSP00000329638	Non-Proteotypic
ANFYCELCDK	green	-15.0	1998	1	ENSP00000329638	Non-Proteotypic
ANFYCELCDK	green	-15.0	1998	1	ENSP00000329638	Non-Proteotypic

MaxQB

	Peptide Sequence	Search Engine	Best Score	Best Evidence ID	Best Raw File ID	Best Msms Scan	Annotation
No results found.

Evidence File /mnt/mpp/ms_data/A4D1E1_maxqb.txt
Reference Christoph Schaab, Tamar Geiger, Gabriele Stoehr, Juergen Cox and Matthias Mann: "Analysis of high-accuracy, quantitative proteomics data in the MaxQB database", Mol Cell Proteomics 11 (2012) M111.014068. http://maxqb.biochem.mpg.de/mxdb/ ">MaxQB

Peptide Sequence	Search Engine	Best Score	Best Evidence ID	Best Raw File ID	Best Msms Scan
HQEFDNHINSYDHAHK	MaxQuant	190.19	3055805	20100609_Velos1_TaGe_SA_GAMG_3	3257
ANFYCELCDK	MaxQuant	87.26	421541	20101230_Velos1_TaGe_SA_Jurkat2	13030
ANFYCEICDK	MaxQuant	61.21	147121	20120508_EXQ4_NaNa_SA_12cellines_cellline09	47846
LIPCSPHLEFEDER	MaxQuant	26.12	4524432	20101210_Velos1_AnWe_SA_MCF7_2	24122

PRIDE

	Peptide Sequence	Scores	Pride ID	Spectrum ID	Annotation
No results found.

Evidence File /mnt/mpp/ms_data/A4D1E1_pridedb.txt
Reference Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456. https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive

Showing 1-20 of 90 items.

PRIDE

Peptide Sequence	Scores	Pride ID	Spectrum ID
ANFYCELCDK	42.24,Mascot:score;2.74636231828565E-4,Mascot:expectation;	PXD000443_31019_385059_A4D1E1_ANFYCELCDK	PXD000443;PRIDE_Exp_Complete_Ac_31019.xml;spectrum=385059
ANFYCELCDK	8.93742281801829E-4,Mascot:expectation;39.42,Mascot:score;	PXD000039_27366_21509_A4D1E1_ANFYCELCDK	PXD000039;PRIDE_Exp_Complete_Ac_27366.xml;spectrum=21509
ANFYCELCDK	8.93742281801829E-4,Mascot:expectation;39.42,Mascot:score;	PXD000443_31020_533278_A4D1E1_ANFYCELCDK	PXD000443;PRIDE_Exp_Complete_Ac_31020.xml;spectrum=533278
QRSTMPNRHQLQSDR	0.09,Mascot:score;0.978444968597911,Mascot:expectation;	PXD000039_27366_6128_A4D1E1_QRSTMPNRHQLQSDR	PXD000039;PRIDE_Exp_Complete_Ac_27366.xml;spectrum=6128
PMKCNSGNISCLLK	0.0040268456,MS-GF:QValue;0.016716214,MS-GF:EValue;53.0,MS-GF:DeNovoScore;0.007853403,MS-GF:PepQValue;32.0,MS-GF:RawScore;	PXD002085_51341_994_A4D1E1_PMKCNSGNISCLLK	PXD002085;TCGA-AA-A02J-01A-23_W_VU_20121126_A0218_6I_R_FR11.mzML;controllerType=0 controllerNumber=1 scan=2710
ILLERVQAKKCQEQSSNVEISSNSCK	36.0,MS-GF:DeNovoScore;8.42815E-4,MS-GF:QValue;0.0025767833,MS-GF:EValue;0.0015015015,MS-GF:PepQValue;-6.0,MS-GF:RawScore;	PXD002087_51621_2706_A4D1E1_ILLERVQAKKCQEQSSNVEISSNSCK	PXD002087;TCGA-AG-3593-01A-22_W_VU_20120921_A0218_3G_R_FR11.mzML;controllerType=0 controllerNumber=1 scan=13298
RESQVSGLTEDQQKLIQEDYQYPKPK	0.0051677665,MS-GF:EValue;2.0,MS-GF:RawScore;34.0,MS-GF:DeNovoScore;0.003021148,MS-GF:PepQValue;0.0015772871,MS-GF:QValue;	PXD002087_51617_359_A4D1E1_RESQVSGLTEDQQKLIQEDYQYPKPK	PXD002087;TCGA-AG-3593-01A-22_W_VU_20120921_A0218_3G_R_FR07.mzML;controllerType=0 controllerNumber=1 scan=8817
RESQVSGLTEDQQKLIQEDYQYPKPK	0.0051677665,MS-GF:EValue;2.0,MS-GF:RawScore;34.0,MS-GF:DeNovoScore;0.003021148,MS-GF:PepQValue;0.0015772871,MS-GF:QValue;	PXD002087_51617_360_A4D1E1_RESQVSGLTEDQQKLIQEDYQYPKPK	PXD002087;TCGA-AG-3593-01A-22_W_VU_20120921_A0218_3G_R_FR07.mzML;controllerType=0 controllerNumber=1 scan=8817
RESQVSGLTEDQQKLIQEDYQYPKPK	0.0051677665,MS-GF:EValue;2.0,MS-GF:RawScore;34.0,MS-GF:DeNovoScore;0.003021148,MS-GF:PepQValue;0.0015772871,MS-GF:QValue;	PXD002087_51617_359_A4D1E1_RESQVSGLTEDQQKLIQEDYQYPKPK	PXD002087;TCGA-AG-3593-01A-22_W_VU_20120921_A0218_3G_R_FR07.mzML;controllerType=0 controllerNumber=1 scan=8817
RESQVSGLTEDQQKLIQEDYQYPKPK	0.0051677665,MS-GF:EValue;2.0,MS-GF:RawScore;34.0,MS-GF:DeNovoScore;0.003021148,MS-GF:PepQValue;0.0015772871,MS-GF:QValue;	PXD002087_51617_360_A4D1E1_RESQVSGLTEDQQKLIQEDYQYPKPK	PXD002087;TCGA-AG-3593-01A-22_W_VU_20120921_A0218_3G_R_FR07.mzML;controllerType=0 controllerNumber=1 scan=8817
PMKCNSGNISCLLK	57.0,MS-GF:DeNovoScore;0.009708738,MS-GF:PepQValue;0.034799896,MS-GF:EValue;33.0,MS-GF:RawScore;0.006193868,MS-GF:QValue;	PXD002087_51651_670_A4D1E1_PMKCNSGNISCLLK	PXD002087;TCGA-AG-A00H-01A-31_W_VU_20121009_A0218_4B_R_FR11.mzML;controllerType=0 controllerNumber=1 scan=3126
RESQVSGLTEDQQKLIQEDYQYPK	0.0,MS-GF:QValue;2.0,MS-GF:RawScore;46.0,MS-GF:DeNovoScore;0.0014257928,MS-GF:EValue;0.0,MS-GF:PepQValue;	PXD002087_51634_3648_A4D1E1_RESQVSGLTEDQQKLIQEDYQYPK	PXD002087;TCGA-AG-3584-01A-22_W_VU_20121007_A0218_4A_R_FR13.mzML;controllerType=0 controllerNumber=1 scan=9616
PMKCNSGNISCLLK	77.0,MS-GF:DeNovoScore;0.0036119712,MS-GF:QValue;0.008759045,MS-GF:EValue;45.0,MS-GF:RawScore;0.0042223786,MS-GF:PepQValue;	PXD002088_51850_790_A4D1E1_PMKCNSGNISCLLK	PXD002088;TCGA-AG-A01W-01A-23_W_VU_20121116_A0218_6C_R_FR12.mzML;controllerType=0 controllerNumber=1 scan=3313
PMKCNSGNISCLLK	0.0010695187,MS-GF:QValue;64.0,MS-GF:DeNovoScore;42.0,MS-GF:RawScore;0.0022383884,MS-GF:PepQValue;0.0071480437,MS-GF:EValue;	PXD002088_51795_3621_A4D1E1_PMKCNSGNISCLLK	PXD002088;TCGA-AG-A01J-01A-22_W_VU_20121231_A0218_8F_R_FR03.mzML;controllerType=0 controllerNumber=1 scan=4499
RLHQLAELRQQSECVSGNGPAYK	0.0057781204,MS-GF:PepQValue;3.0,MS-GF:RawScore;0.004118616,MS-GF:QValue;0.036947116,MS-GF:EValue;50.0,MS-GF:DeNovoScore;	PXD002088_51772_3798_A4D1E1_RLHQLAELRQQSECVSGNGPAYK	PXD002088;TCGA-AG-A014-01A-12_W_VU_20120824_A0218_2F_R_FR05.mzML;controllerType=0 controllerNumber=1 scan=7840
RLHQLAELRQQSECVSGNGPAYK	0.0057781204,MS-GF:PepQValue;3.0,MS-GF:RawScore;0.004118616,MS-GF:QValue;0.036947116,MS-GF:EValue;50.0,MS-GF:DeNovoScore;	PXD002088_51772_3799_A4D1E1_RLHQLAELRQQSECVSGNGPAYK	PXD002088;TCGA-AG-A014-01A-12_W_VU_20120824_A0218_2F_R_FR05.mzML;controllerType=0 controllerNumber=1 scan=7840
RLHQLAELRQQSECVSGNGPAYK	0.0057781204,MS-GF:PepQValue;3.0,MS-GF:RawScore;0.004118616,MS-GF:QValue;0.036947116,MS-GF:EValue;50.0,MS-GF:DeNovoScore;	PXD002088_51772_3798_A4D1E1_RLHQLAELRQQSECVSGNGPAYK	PXD002088;TCGA-AG-A014-01A-12_W_VU_20120824_A0218_2F_R_FR05.mzML;controllerType=0 controllerNumber=1 scan=7840
RLHQLAELRQQSECVSGNGPAYK	0.0057781204,MS-GF:PepQValue;3.0,MS-GF:RawScore;0.004118616,MS-GF:QValue;0.036947116,MS-GF:EValue;50.0,MS-GF:DeNovoScore;	PXD002088_51772_3799_A4D1E1_RLHQLAELRQQSECVSGNGPAYK	PXD002088;TCGA-AG-A014-01A-12_W_VU_20120824_A0218_2F_R_FR05.mzML;controllerType=0 controllerNumber=1 scan=7840
PMKCNSGNISCLLK	0.03018228,MS-GF:EValue;64.0,MS-GF:DeNovoScore;0.005171603,MS-GF:PepQValue;36.0,MS-GF:RawScore;0.0038260869,MS-GF:QValue;	PXD002088_51806_3058_A4D1E1_PMKCNSGNISCLLK	PXD002088;TCGA-AG-A016-01A-23_W_VU_20120730_A0218_1D_R_FR10.mzML;controllerType=0 controllerNumber=1 scan=3384
QQSECVSGNGPAYKAPRVAIEK	22.0,MS-GF:RawScore;57.0,MS-GF:DeNovoScore;0.0042525353,MS-GF:QValue;0.020382049,MS-GF:EValue;0.006175772,MS-GF:PepQValue;	PXD002088_51848_2738_A4D1E1_QQSECVSGNGPAYKAPRVAIEK	PXD002088;TCGA-AG-A01Y-01A-43_W_VU_20120826_A0218_2G_R_FR07.mzML;controllerType=0 controllerNumber=1 scan=4611

Evidence File /mnt/mpp/ms_data/A4D1E1_pridedb.txt
Reference Vizcaino JA, et al. 2016 update of the PRIDE database and related tools. Nucleic Acids Res. 2016 Jan 1;44(D1):D447-D456. https://www.ebi.ac.uk/pride/archive/ ">PRIDE Archive

Showing 1-2 of 2 items.

Proteomics DB

	Peptide Sequence	Search Engine	Score	Threshold Score	Identification ID	Experiment ID	Annotation
	NNSSENK	Maxquant	139.31	0	790813678	2297
	NNSSENK	Maxquant	122.13	0	248212141	274

Evidence File /mnt/mpp/ms_data/A4D1E1_protdb.txt
Reference Wilhelm, M et al. (2014) Mass-spectrometry-based draft of the human proteome. Nature. 509:582-7. https://www.proteomicsdb.org/ ">Proteomics DB

ZNF804B:Zinc finger protein 804B

Gene Reference Into Function (GeneRIF)

OMICSDI Browser

Relevant citations within the PubMed literature

Relevant PubMed citations

Putative/known Functions

Molecular function

Localisation

Homologues, Orthologues, Paralogues and Family

Orthologues

Paralogues

Family

Sequence Similarity and Functional Annotation

Sequence Similarity

InterProScan Annotation

Post Translational Modifications

Post Translational Modifications

Protein Protein Interactions

Best Available Mass Spectra without FDR

gpmDB

gpmDB

MaxQB

MaxQB

PRIDE

PRIDE

Proteomics DB

Proteomics DB

Structural Studies

Peptide Sequence	Search Engine	Score	Identification ID	Experiment ID
HQEFDNHINSYDHAHK	Maxquant	207.79	1359421590	-1
HQEFDNHINSYDHAHK	Maxquant	192.24	809748374	2354
HQEFDNHINSYDHAHK	Maxquant	188.06	809748381	2354
HQEFDNHINSYDHAHK	Maxquant	149	55931626	-1
NNSSENK	Maxquant	139.31	790813678	2297
ANFYCELCDK	Maxquant	136.96	268183844	2
HQEFDNHINSYDHAHK	Maxquant	136.34	1288072692	-1
FDNHINSYD	Maxquant	123.6	5684125	255
NNSSENK	Maxquant	122.13	248212141	274
NNSSENK	Maxquant	110.81	854451585	2402
ANFYCELCDK	Maxquant	109.6	66958451	264
NQESLGSPHICDLGK	Maxquant	105.03	1254477697	3066
SWKDEKK	Maxquant	101.28	279790616	97
HQEFDNHINSYDHAHK	Maxquant	98.281	8244999	255
DFSVILK	Maxquant	97.071	19589824	1
NQESLGSPHICDLGK	Maxquant	93.768	245000992	269
REHHSVER	Maxquant	93.429	790999992	2297
EKSLDKTER	Maxquant	91.069	273080375	96
ANFYCELCDK	Maxquant	88.948	1908461	122
ILQLQAQQHMQK	Maxquant	88.596	245967143	271